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Ever since SSH host certificate support was added in 0.78, attempting to add a new trusted host certification authority record in the Unix version on a clean installation would fail: on hitting the 'Save' button in the 'Configure host CAs' dialogue would give a message like "Unable to open file '/home/[user]/.putty/sshhostcas/[name]'".
There was no code to create the directory ~/.putty/sshhostcas if it didn't already exist (which it almost certainly didn't).
A workaround if using a version of PuTTY without this fix is to create the directory by hand before attempting to add the first host CA record:
mkdir ~/.putty/sshhostcas
(This problem only affects the Unix version of PuTTY; it does not affect the Windows version.)