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A few people have expressed a desire for an MSI-based Windows installer for PuTTY. Apparently MSI is easier/possible to deploy via various software deployment mechanisms (Group Policy, SMS, Active Directory), compared to our current Inno Setup installer.
Apparently WiX is a free thing that will create MSI-based installers. This page lists some others.
WiX script: B9638CACBA387E48927BB56B6A1555070DA08E@svr1.irtnog.org